Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30510
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...   197   7e-51
At1g56130.1 68414.m06445 leucine-rich repeat family protein / pr...    32   0.35 
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           31   1.1  
At3g45060.1 68416.m04857 high-affinity nitrate transporter, puta...    29   2.5  
At3g19190.1 68416.m02436 expressed protein                             29   3.3  
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb...    28   7.5  
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb...    28   7.5  
At2g25970.1 68415.m03117 KH domain-containing protein                  27   9.9  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score =  197 bits (480), Expect = 7e-51
 Identities = 98/203 (48%), Positives = 142/203 (69%), Gaps = 2/203 (0%)
 Frame = +3

Query: 48  MSGKD-RLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMG 224
           M+G++ RL + P+     ++K RL GA +GH LLKKK+DAL V+FR +L KI+  K  MG
Sbjct: 1   MAGQNARLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMG 60

Query: 225 EVMKEAAFSLAEAKFTTGD-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDT 401
           ++MK ++F+L E K+  GD    VVL+NV +A +K+RS+ +N+AGV LP F+ + +G   
Sbjct: 61  DMMKTSSFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETK 120

Query: 402 YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 581
            +L GLARGGQQ+   +  +  A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ P
Sbjct: 121 NDLTGLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKP 180

Query: 582 RLERTLAYIISRAGRA*A*EFYR 650
           +LE T++YI          +F+R
Sbjct: 181 KLENTISYIKGELDELEREDFFR 203


>At1g56130.1 68414.m06445 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1032

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +3

Query: 78  PSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLA 257
           PS+G      G + G + G GLL   A  +    R    +  + + L+G  +K   F+ +
Sbjct: 628 PSKGKNRT--GTIVGVIVGVGLLSILAGVVMFTIRKRRKRYTDDEELLGMDVKPYIFTYS 685

Query: 258 EAKFTTGDFN 287
           E K  T DF+
Sbjct: 686 ELKSATQDFD 695


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +3

Query: 267 FTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAK 446
           F   D   +  Q   + Q     ++ +VAG  +P++ES    S+ +   G + GG+ L  
Sbjct: 46  FDRSDSPNLTTQQKQEHQRVEMDEESSVAGGRIPVYESAGMLSEMFNFPGSSGGGRDL-D 104

Query: 447 LKKNFQSAVKLLVE 488
           L ++F+S  +LL E
Sbjct: 105 LGQSFRSNRQLLEE 118


>At3g45060.1 68416.m04857 high-affinity nitrate transporter,
           putative similar to trans-membrane nitrate transporter
           protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
           high-affinity nitrate transporter ACH1 [Arabidopsis
           thaliana] GI:3608362
          Length = 542

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 608 HLPSWTSLSVRVLPSQE-DPGQEEDYQGQGRSEKSRSSGCRQ 730
           H P W S+ +R  PSQ+ +  +EE Y G   +E+ +S G  +
Sbjct: 470 HFPQWGSMFLR--PSQDGEKSKEEHYYGAEWTEEEKSLGLHE 509


>At3g19190.1 68416.m02436 expressed protein
          Length = 1861

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 508 EVCSDANSTKSFTALWKFFLSFASCCPPRAKPANS*VSEPSWYDSKIGRVTPATLS 341
           EV    ++ + F  LWK F SF S C P    ++     P+   + +    PATLS
Sbjct: 309 EVRFQPSTIRWFLQLWKTFTSFGSDCFPSVSHSDFLTDSPT-IPTNVMVTPPATLS 363


>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 423

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 396 DTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTS-FVTLDEVIKITNRRVNAIEHV 572
           D Y+  G++  G+Q  K+K+   + +  +  L  L+ +  +  D +I   +      E V
Sbjct: 126 DNYKSMGISPYGEQFMKMKRVITTEIMSVKTLKMLEAARTIEADNLIAYVHSMYQRSETV 185

Query: 573 IIPRLERTLAYIIS 614
            +  L R   Y ++
Sbjct: 186 DVRELSRVYGYAVT 199


>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 538

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 396 DTYELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTS-FVTLDEVIKITNRRVNAIEHV 572
           D Y+  G++  G+Q  K+K+   + +  +  L  L+ +  +  D +I   +      E V
Sbjct: 126 DNYKSMGISPYGEQFMKMKRVITTEIMSVKTLKMLEAARTIEADNLIAYVHSMYQRSETV 185

Query: 573 IIPRLERTLAYIIS 614
            +  L R   Y ++
Sbjct: 186 DVRELSRVYGYAVT 199


>At2g25970.1 68415.m03117 KH domain-containing protein 
          Length = 632

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 578 SPAGTYTRVHHLPSWTSLSVRVLPSQEDPGQEEDYQGQGRSEKSRSSG 721
           SP G+Y +      +   SV   PSQ+    E DY GQ +S++  S G
Sbjct: 360 SPYGSYPQQTSAGYYDQSSVP--PSQQSAQGEYDYYGQQQSQQPSSGG 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,715,680
Number of Sequences: 28952
Number of extensions: 290619
Number of successful extensions: 809
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)