BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30457 (786 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 269 2e-72 SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 98 6e-21 SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09 SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61 SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8 SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 30 2.4 SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6 SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4) 29 5.6 SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05) 28 7.5 SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9 SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9 >SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) Length = 448 Score = 269 bits (659), Expect = 2e-72 Identities = 131/175 (74%), Positives = 145/175 (82%) Frame = +2 Query: 212 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 391 DVQF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ +D+G P Sbjct: 85 DVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGP 144 Query: 392 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 571 I IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAPEFV+MS +QEIL TGIKVVD Sbjct: 145 ITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVD 204 Query: 572 LLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTREGNDL 736 LLAPYA TVLIMELINNVAKAHGGYSVFAGVG + D+ Sbjct: 205 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGYQPTLATDM 259 >SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) Length = 238 Score = 98.3 bits (234), Expect = 6e-21 Identities = 47/75 (62%), Positives = 53/75 (70%) Frame = +2 Query: 542 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTR 721 +L TGIKV+DL+ PYA TVLI ELINN+AK HGG SVFAGVGERTR Sbjct: 2 VLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTR 61 Query: 722 EGNDLYHEMIESGVI 766 EGNDL EM+ESG+I Sbjct: 62 EGNDLLREMLESGII 76 >SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 390 Score = 60.9 bits (141), Expect = 1e-09 Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%) Frame = +2 Query: 329 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 505 + + G + L++ G V +G+ + +PVG E LGR+++ +G PID +GP + A + + Sbjct: 12 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70 Query: 506 APEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 685 AP + + +E ++TGIK VD L P T + ++ I N + + G Sbjct: 71 APGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDG 130 >SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 232 Score = 31.9 bits (69), Expect = 0.61 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = -3 Query: 322 NCVLTQMLGYLKYEAGRSILHLKGI*NRRQVIFEL-HIYHSTDNGNNLTLAFSCRFSS 152 NC+L + GYLK ++ I++ G QV++ L +Y S + GNNL F +S Sbjct: 48 NCLLWTIYGYLKDDSTIIIVNFVGA--LLQVVYILCFLYFSRERGNNLAFLFYSAIAS 103 >SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1554 Score = 30.3 bits (65), Expect = 1.8 Identities = 24/69 (34%), Positives = 29/69 (42%) Frame = -1 Query: 513 SGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSM 334 SG+S+ A +L GP SS+ P T P PTG+ M P S P P P M Sbjct: 671 SGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725 Query: 333 AMVRTVFSP 307 SP Sbjct: 726 GTHPQQVSP 734 >SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) Length = 308 Score = 29.9 bits (64), Expect = 2.4 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = -1 Query: 447 SPITLMMRPRV-SAPTGIRMGEPESSTG 367 S +T +P SAPTGI G+P SSTG Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139 >SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 363 Score = 28.7 bits (61), Expect = 5.6 Identities = 16/32 (50%), Positives = 18/32 (56%) Frame = +2 Query: 383 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 478 G PI P+G +GR I IG PI GPI T Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312 >SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4) Length = 231 Score = 28.7 bits (61), Expect = 5.6 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = -3 Query: 571 IDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTAL-VNRFAD--YIDDASEGFSSH 404 +DD Y Y + L+ +VD L+ V G L V+ + D Y+D +GF SH Sbjct: 168 VDDLYNGYVDDLIDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDGFQSH 226 >SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05) Length = 1119 Score = 28.3 bits (60), Expect = 7.5 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -2 Query: 626 HQLRQTTQSFLLWHKERADRRLLYQLRESPAAQTCRQTLEL 504 + LR + WH+E+ R +++ LRE A C Q +E+ Sbjct: 467 YDLRGMKEEDAQWHREQVSRGVVFNLREELAIY-CHQDVEV 506 >SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 128 Score = 27.9 bits (59), Expect = 9.9 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = -3 Query: 613 KQPNLSSFGIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTALVNRF 446 +QP L G D + YE+LL RH DKL + N S + GD RF Sbjct: 50 QQPMLLEIGAPINIFGDIHGQYEDLL--RHFDKL-GYPPNESYIFLGDYVDRPKRF 102 >SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1122 Score = 27.9 bits (59), Expect = 9.9 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +2 Query: 362 GQPVLDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 469 GQP D+G P G + G+++N GEP++ GP Sbjct: 94 GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,077,108 Number of Sequences: 59808 Number of extensions: 548651 Number of successful extensions: 1504 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1362 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1497 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2155861620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -