Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30445
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 125 3e-29
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 112 3e-25
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 48 7e-06
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 39 0.003
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 35 0.066
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 33 0.27
02_03_0379 - 18331549-18331595,18331676-18331751 31 1.1
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 29 4.3
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 125 bits (302), Expect = 3e-29
Identities = 55/70 (78%), Positives = 62/70 (88%)
Frame = +2
Query: 92 INPKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLI 271
+NPKPFLN+LTGK V+VKLKWG EYKG LVS D YMNLQLANTEE +DG +GNLGE+LI
Sbjct: 57 VNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNLGEILI 116
Query: 272 RCNNVLYVRG 301
RCNNVLY+RG
Sbjct: 117 RCNNVLYLRG 126
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 112 bits (269), Expect = 3e-25
Identities = 55/82 (67%), Positives = 62/82 (75%), Gaps = 12/82 (14%)
Frame = +2
Query: 92 INPKPFLNSLTGKSVLVKLKWGHEYK------------GLLVSTDGYMNLQLANTEELVD 235
+NPKPFLN+LTGK V+VKLKWG EYK G LVS D YMNLQLANTEE +D
Sbjct: 6 VNPKPFLNNLTGKPVIVKLKWGMEYKVFRFCLTIDYADGYLVSVDSYMNLQLANTEEYID 65
Query: 236 GTCTGNLGEVLIRCNNVLYVRG 301
G +GNLGE+LIRCNNVLY+RG
Sbjct: 66 GQFSGNLGEILIRCNNVLYLRG 87
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 167 KGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLYV 295
+G+L DGYMN+ + TEE V+G G+ IR NNVLY+
Sbjct: 432 RGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 474
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 98 PKPFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTE-ELVDGTCTGNLGEVLIR 274
P L + G +LV+LK G Y G LV+ D +MN+ L DG + E IR
Sbjct: 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIR 62
Query: 275 CNNVLYVRGAD 307
N + Y+R D
Sbjct: 63 GNTIKYLRVPD 73
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 34.7 bits (76), Expect = 0.066
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +2
Query: 104 PFLNSLTGKSVLVKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNN 283
P L K + +KL G L D +MNL + NT E V+G ++G V++R N+
Sbjct: 8 PDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE-VNGNDKTDIGMVVVRGNS 66
Query: 284 VLYVRGAD 307
V+ + +
Sbjct: 67 VVMIEALE 74
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 32.7 bits (71), Expect = 0.27
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +2
Query: 116 SLTGKSVL-VKLKWGHEYKGLLVSTDGYMNLQLANTEELVDGTCTGNLGEVLIRCNNVLY 292
S T S+L VKL G L D +MNL + NT E V+G ++G V+IR N+V+
Sbjct: 25 SFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNTVE-VNGNEKNDIGMVVIRGNSVVM 83
Query: 293 VRGAD 307
+ +
Sbjct: 84 IEALE 88
>02_03_0379 - 18331549-18331595,18331676-18331751
Length = 40
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 209 LANTEELVDGTCTGNLGEVLIRCNNVLYV 295
+ TEE V+G G+ IR NNVLY+
Sbjct: 1 MEQTEEYVNGQLKNKYGDAFIRGNNVLYI 29
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 167 KGLLVSTDGYMNLQLANTEEL-VDGTCTGNLGEVLIRCNNV 286
+G ++ D YMNL L + EE+ V +LG +L++ +N+
Sbjct: 31 EGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNI 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,075,784
Number of Sequences: 37544
Number of extensions: 191301
Number of successful extensions: 392
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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