Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30126
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    24   1.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.2  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.7  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 314 VHGDFETYGTHRSHWIFA*SNVSTYICT*LKNTYRLVLSRRNQAVCNHASVYASQCSSCR 493
           V GDF + G H +  IFA    + +    ++   + V   +++  C     + +QC +CR
Sbjct: 40  VCGDFSS-GKHYN--IFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACR 96


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 314 VHGDFETYGTHRSHWIFA*SNVSTYICT*LKNTYRLVLSRRNQAVCNHASVYASQCSSCR 493
           V GDF + G H +  IFA    + +    ++   + V   +++  C     + +QC +CR
Sbjct: 40  VCGDFSS-GKHYN--IFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACR 96


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 179 SAINCRRNDKNCGKES 132
           S INC+ ND++C + S
Sbjct: 16  SGINCQTNDEDCTETS 31


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 230  AFYGFCDGLRRDFTGNARNSSHAKATYTVHGD 325
            A+Y  C+ +R       R++S A   +  HGD
Sbjct: 905  AYYEICNRIRNQRWIVNRDTSGATGPFAYHGD 936


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 153 VISSAVNCTDFSIISSPIVAAAFFTVPSMV 242
           ++  A    DF  +   I   +FF +PS V
Sbjct: 197 ILKMATQLVDFKSVIRSISVFSFFFMPSFV 226


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 599 CSLCRWRYRRR 567
           C  CR R+RRR
Sbjct: 249 CDKCRGRFRRR 259


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,677
Number of Sequences: 336
Number of extensions: 2616
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)