Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30979
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    23   0.84 
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    23   0.84 
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    23   0.84 
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    23   0.84 
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    23   0.84 
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    23   0.84 
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    23   0.84 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   0.84 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   0.84 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   0.84 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   0.84 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   0.84 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   0.84 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   0.84 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   0.84 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   0.84 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.6  
AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly pro...    21   3.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   3.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   5.9  

>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 143 PPNPRFGPM 151


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 143 PPNPRFGPM 151


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 143 PPNPRFGPM 151


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 143 PPNPRFGPM 151


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 143 PPNPRFGPM 151


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 143 PPNPRFGPM 151


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 143 PPNPRFGPM 151


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 392 PPNPRFGPM 400


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 392 PPNPRFGPM 400


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 392 PPNPRFGPM 400


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 392 PPNPRFGPM 400


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 392 PPNPRFGPM 400


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 392 PPNPRFGPM 400


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 391 PPNPRFGPM 399


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 376 PPNPRFGPM 384


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 171 PPNPNFGPL 197
           PPNP FGP+
Sbjct: 392 PPNPRFGPM 400


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 134 IVDVHFESWQFVSQVRHHFLLQFGCP 57
           IVD H  S  F+    +   L+ GCP
Sbjct: 359 IVDHHTASESFMKHYENEMRLRNGCP 384


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 84  SLSSAVWLSW 55
           +LSSAVW +W
Sbjct: 609 NLSSAVWFAW 618


>AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 31

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 236 RWSYQFLALGIQHQGSEVR 180
           RW +    LGI  QG+ VR
Sbjct: 3   RWLFMVACLGIACQGAIVR 21


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 236 RWSYQFLALGIQHQGSEVR 180
           RW +    LGI  QG+ VR
Sbjct: 3   RWLFMVACLGIACQGAIVR 21


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 307 YNLV*IKPLFLLQHNLMTK 251
           +NLV I PLF +  +L  K
Sbjct: 303 FNLVKISPLFTIWGSLFAK 321


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 307 YNLV*IKPLFLLQHNLMTK 251
           +NLV I PLF +  +L  K
Sbjct: 53  FNLVKISPLFTIWGSLFAK 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,346
Number of Sequences: 438
Number of extensions: 1588
Number of successful extensions: 22
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)