Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30945
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 361  LMLPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVACT 480
            L+ PE     S+MP + + T+  A+T   A  M   VA T
Sbjct: 906  LIRPERNVRQSMMPTRYSTTKSSAVTATNASSMIAPVALT 945


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -3

Query: 386 PGSFSGNISSASPQRGPEASSRMSFAIFMSDTAMVLSAPETSTMRRGTP 240
           PG      S++  QRG  A+ R     ++++   + S P   ++ +G P
Sbjct: 584 PGQSPDWPSTSQIQRGVNAAIRSQEPFYITEPHQIFSFPARLSLPKGQP 632


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 261 HHASWHASASNLFGAVSNGIP--VSAAISAAHFSA 163
           HH    A A+  FGA S+ +P   S A S+A  +A
Sbjct: 100 HHQQQQAVAAAAFGATSSMVPGFGSTAASSAALAA 134


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 521 LEHVGSKCPLLPPTVHATW 465
           L +VGS+  ++P  ++ TW
Sbjct: 795 LNYVGSEDSVIPRILYLTW 813


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,902
Number of Sequences: 438
Number of extensions: 2448
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)