Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30904
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    28   0.030
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   2.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   2.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   2.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   4.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    20   7.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    20   7.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   7.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   7.8  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 27.9 bits (59), Expect = 0.030
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 6   GPPGPQGLHGEKGDQGLVGRPGLPG 80
           G  G QG+ G +G QG+ G  G+PG
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 27.9 bits (59), Expect = 0.030
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 15  GPQGLHGEKGDQGLVGRPGLPGQPG 89
           G QG+ G +G QG+ G  G+ G PG
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPG 876



 Score = 27.1 bits (57), Expect = 0.052
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 6   GPPGPQGLHGEKGDQGLVGRPGL 74
           G  G QG+ G +G QG+ G PGL
Sbjct: 855 GVQGVQGVQGVQGVQGVQGVPGL 877



 Score = 23.0 bits (47), Expect = 0.84
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 21  QGLHGEKGDQGLVGRPGLPGQPG 89
           QG+ G +G QG+ G  G+ G  G
Sbjct: 851 QGVQGVQGVQGVQGVQGVQGVQG 873



 Score = 21.8 bits (44), Expect = 1.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 15  GPQGLHGEKGDQGLVGRPGLPGQPG 89
           G QG+   +G QG+ G  G+ G  G
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQG 867



 Score = 20.2 bits (40), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 21  QGLHGEKGDQGLVGRPGLPGQPG 89
           QG+ G +  QG+ G  G+ G  G
Sbjct: 842 QGVQGVQTAQGVQGVQGVQGVQG 864


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 12  PGPQGLHGEKGD 47
           PGP G+ G+ GD
Sbjct: 332 PGPPGVPGDHGD 343



 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 6   GPPGPQGLHGE 38
           GPPG  G HG+
Sbjct: 333 GPPGVPGDHGD 343



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 201 PGVIGLPGQKGD 236
           PG  G+PG  GD
Sbjct: 332 PGPPGVPGDHGD 343


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 12  PGPQGLHGEKGD 47
           PGP G+ G+ GD
Sbjct: 332 PGPPGVPGDHGD 343



 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 6   GPPGPQGLHGE 38
           GPPG  G HG+
Sbjct: 333 GPPGVPGDHGD 343



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 201 PGVIGLPGQKGD 236
           PG  G+PG  GD
Sbjct: 332 PGPPGVPGDHGD 343


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 12  PGPQGLHGEKGD 47
           PGP G+ G+ GD
Sbjct: 271 PGPPGVPGDHGD 282



 Score = 20.6 bits (41), Expect = 4.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 6   GPPGPQGLHGE 38
           GPPG  G HG+
Sbjct: 272 GPPGVPGDHGD 282



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 201 PGVIGLPGQKGD 236
           PG  G+PG  GD
Sbjct: 271 PGPPGVPGDHGD 282


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 86  RSKR*CRTRGARWGPRYSWITR*GWSKR 169
           R+ + C   GA     +SWI   GWS R
Sbjct: 359 RAVKRCNATGA-----FSWIGSDGWSAR 381


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = -2

Query: 116 PHGSCITFLTWLTR*SRSTHQSLISLFSM*ALRTWRTI 3
           P    + F+TWL   + + +  + ++F++   R +R +
Sbjct: 358 PSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFRRL 395


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = -2

Query: 116 PHGSCITFLTWLTR*SRSTHQSLISLFSM*ALRTWRTI 3
           P    + F+TWL   + + +  + ++F++   R +R +
Sbjct: 358 PSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFRRL 395


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +3

Query: 3   DGPPGPQGLHGEKGDQGLV 59
           D P G    HG  G  G++
Sbjct: 335 DDPVGASATHGASGIWGII 353


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = -2

Query: 116 PHGSCITFLTWLTR*SRSTHQSLISLFSM*ALRTWRTI 3
           P    + F+TWL   + + +  + ++F++   R +R +
Sbjct: 358 PSDRMVYFITWLGYVNSALNPLIYTIFNLDYRRAFRRL 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,035
Number of Sequences: 438
Number of extensions: 2109
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)