Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30901
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 55   ATFSLLGFKE 26
            ATF LLGF+E
Sbjct: 1726 ATFHLLGFRE 1735


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 58  RWCTFRSKDRPALKLREDNAYIKTIK 135
           RWCT+   D    K     AY + ++
Sbjct: 387 RWCTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 58  RWCTFRSKDRPALKLREDNAYIKTIK 135
           RWCT+   D    K     AY + ++
Sbjct: 387 RWCTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 58  RWCTFRSKDRPALKLREDNAYIKTIK 135
           RWCT+   D    K     AY + ++
Sbjct: 387 RWCTWSEGDLEKCKALTRAAYSRDVR 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,953
Number of Sequences: 438
Number of extensions: 1674
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)