Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30860
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   4.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 532 PQKMQVPSQA*TFSEFINEPTAAAIAYGLDKKGTGERNVLI 654
           P    +PS A      I++ +A ++A GL  +GT  R V +
Sbjct: 440 PTMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAV 480


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 487 AVITVPASSMTLKDKPQKMQVPSQA*TFSEFINEPTAAAIAYG 615
           +V+T+  S + +     +M        FS   + PTAA I+YG
Sbjct: 89  SVLTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFISYG 131


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 68 PFCIFNQSCYLFLKQ 24
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,950
Number of Sequences: 438
Number of extensions: 4624
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)