Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30836
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.58 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.1  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   4.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 343 WVGKFFGCVCGDQSPSNTILYLASSQAQQSGWTETC 236
           WV    GC+    +  N ILY   S   ++ + ETC
Sbjct: 296 WVYPLTGCLYYFSTTINPILYNVMSAKYRNAFKETC 331


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 82   VEADDLPKTEVQVMWKAPP 138
            +  DDL +  ++V WK PP
Sbjct: 983  IRVDDLDQHTLKVTWKPPP 1001


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 303 LWSPQTHPKNFPTQALWLTHFSDVIGATHP 392
           +W+P  +  N P+ A+   +  DV+ +  P
Sbjct: 97  IWTPTVYVSNEPSSAITGNNVKDVLVSIDP 126


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 189 TRIFIHHRLQKHAS*TSRWRFPHDLD 112
           T+ FI H+  +++     WR P  +D
Sbjct: 16  TKKFIRHQSDRYSKLKRNWRKPKGID 41


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 109 EVQVMWKAPPAGSGCVLLKAMVYENASRWF 198
           E+    K+    + CVL    ++++ S WF
Sbjct: 471 EISTRPKSNTVENACVLKNTEIFKDKSDWF 500


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 696 LDSTQEQSFWQRSSPLTPTTQSGDGPN 616
           + S++E  FWQ    L    Q+   PN
Sbjct: 378 ISSSEENDFWQPKPTLEDAPQNSLLPN 404


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 369 DVIGATHPKNFTFWGEGQLASDGFRSLAEWGSVGLMERELRQH 497
           D + + HP ++  +G+G     G R       VGL+   LR H
Sbjct: 424 DAMASRHPMHYLPFGDGPRNCIGARFAVYQTKVGLI-TILRNH 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,816
Number of Sequences: 438
Number of extensions: 4887
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)