Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30761
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.55 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   0.72 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   0.96 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   0.96 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   6.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 251  DGFLSSTDDVGSFXGSW 201
            DG  SS  D GS  GSW
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 0.72
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 220 PTSSVELRNPSYCAYPIRIRSVKSNKI 300
           PT+ ++L+   +C Y   +R + S++I
Sbjct: 41  PTTLLKLKRYLFCEYDPNVRPISSHQI 67


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 0.96
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 37  KRVRGRIIPKRINIRVEHVKHSKCRQKTSLRESKRMRGY*RKPRLPARPST*RDSQ 204
           KRV   I+P+ + +R    K    R  +     + +RG  +    P  PST  DS+
Sbjct: 346 KRVFIHILPRLLVMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSE 401


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 0.96
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 37  KRVRGRIIPKRINIRVEHVKHSKCRQKTSLRESKRMRGY*RKPRLPARPST*RDSQ 204
           KRV   I+P+ + +R    K    R  +     + +RG  +    P  PST  DS+
Sbjct: 346 KRVFIHILPRLLVMRRPQYKFETNRYSSGRVLMRTVRGKEKTCYYPYHPSTQEDSE 401


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 149 PLILFDSLKEVFCLHLEC 96
           P+     LKE+F L +EC
Sbjct: 137 PIFTSGKLKEMFYLIIEC 154


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 37  KRVRGRIIPKRINIRVEHVKHSKCRQKTSLRESKRMR 147
           KRV   +   R +  + H +HSK  Q+    E  R R
Sbjct: 39  KRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMRER 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,400
Number of Sequences: 438
Number of extensions: 1268
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)