Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30745
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.71 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.71 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   3.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   3.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   3.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   8.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 394  STQNALLLHCRNRQGGGTYPCGLTRGLTTTH 486
            ST +++LLH ++   GG    G T    T H
Sbjct: 1415 STSSSILLHWKSGHNGGASLTGYTLHYRTAH 1445


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 394  STQNALLLHCRNRQGGGTYPCGLTRGLTTTH 486
            ST +++LLH ++   GG    G T    T H
Sbjct: 1411 STSSSILLHWKSGHNGGASLTGYTLHYRTAH 1441


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 165 MALETLFLRVLFFIYSN 215
           M + ++FL ++ FIYSN
Sbjct: 8   MFIHSIFLILIIFIYSN 24


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 85  FHNNAYNNMYKF*CK 129
           ++NN YNN Y   CK
Sbjct: 338 YNNNNYNNNYNNNCK 352


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 165 MALETLFLRVLFFIYSN 215
           M + ++FL ++ FIYSN
Sbjct: 8   MFIHSIFLILIIFIYSN 24


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 507 YHSYYGAMSGG 475
           YH Y G +SGG
Sbjct: 127 YHLYMGLLSGG 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,073
Number of Sequences: 438
Number of extensions: 3901
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)