Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30156
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_15335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 323 CDYDADRYRHPAYFCREAVMRFG*RVGQPL*LETLELYISRWMAH 189
           C  DA+   HPA+FC     RF   V +   +ET  +  + W+ H
Sbjct: 152 CTCDANYPTHPAFFCEPLCTRFVDSVCEQGFVETHVMVAAEWVGH 196


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 134  HSPPGVNWLLEPIDIYNVNAPSTLRYKVLRSQVT 235
            HS  G  +  E  D Y    P T RY ++R  VT
Sbjct: 983  HSTHGAAYRTEQCDTYQTGRPDTTRYGIVRHGVT 1016


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 260 NALLLHGRNRQGGGTYPHRNRNS*IRLSKENTIANSMRPIRVSV 391
           N+  L  +NR+G GTYP R+ N     +K + +A   RP  + +
Sbjct: 727 NSFSLEDKNREGPGTYPLRSGN-----AKPDVLAKLHRPQNMKI 765


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,201,440
Number of Sequences: 59808
Number of extensions: 436607
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)