Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00295
(392 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 132 6e-32
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 128 1e-30
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 128 1e-30
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 29 1.1
At2g31890.1 68415.m03896 expressed protein 28 2.0
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 27 3.4
At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ... 27 3.4
At5g20885.1 68418.m02480 zinc finger (C3HC4-type RING finger) fa... 27 6.0
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta... 26 7.9
At3g57760.1 68416.m06434 protein kinase family protein contains ... 26 7.9
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 26 7.9
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 26 7.9
At2g30940.2 68415.m03773 protein kinase family protein contains ... 26 7.9
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 132 bits (320), Expect = 6e-32
Identities = 65/88 (73%), Positives = 78/88 (88%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 AKATS-DWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIS 177
AK T+ +WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS
Sbjct: 47 AKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNIS 106
Query: 178 LEDVIGIAKIMRNRSMARYLSGSVKEFL 261
+DVI IAKIMR RS+A+ LSG+VKE L
Sbjct: 107 FDDVIEIAKIMRPRSIAKELSGTVKEIL 134
Score = 44.4 bits (100), Expect = 3e-05
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +3
Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
K ILGT SVGCTV+G+ P DL ++INSG
Sbjct: 131 KEILGTCVSVGCTVDGKDPKDLQEEINSG 159
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 128 bits (309), Expect = 1e-30
Identities = 62/88 (70%), Positives = 77/88 (87%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 AKATS-DWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIS 177
AK T+ +WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS
Sbjct: 47 AKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNIS 106
Query: 178 LEDVIGIAKIMRNRSMARYLSGSVKEFL 261
+DV IA+IMR RS+A+ LSG+V+E L
Sbjct: 107 FDDVTEIARIMRPRSIAKELSGTVREIL 134
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
+ ILGT SVGCTV+G+ P DL +I G
Sbjct: 131 REILGTCVSVGCTVDGKDPKDLQQEIQEG 159
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 128 bits (309), Expect = 1e-30
Identities = 62/88 (70%), Positives = 77/88 (87%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 AKATS-DWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNIS 177
AK T+ +WKGL++TV+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS
Sbjct: 47 AKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNIS 106
Query: 178 LEDVIGIAKIMRNRSMARYLSGSVKEFL 261
+DV IA+IMR RS+A+ LSG+V+E L
Sbjct: 107 FDDVTEIARIMRPRSIAKELSGTVREIL 134
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 249 KRILGTAQSVGCTVEGRPPHDLIDDINSG 335
+ ILGT SVGCTV+G+ P D+ +I G
Sbjct: 131 REILGTCVSVGCTVDGKDPKDIQQEIQDG 159
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 29.1 bits (62), Expect = 1.1
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 206 IFAIPITSSREMLPLCLIFFCFL 138
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 121 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 228
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -1
Query: 242 PERYRAIDLFLMIFAIPITSSREMLPLCLIFFCFLRSRGGSLRA 111
P R+ ++ + I + ++ +L LC+++ C+ + R S+RA
Sbjct: 645 PRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRA 688
>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
ADP, ATP translocase 1 / adenine nucleotide translocase
1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
carrier protein 1, chloroplast precursor (ADP/ATP
translocase 1) (Adenine nucleotide translocase 1)
{Arabidopsis thaliana}
Length = 624
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 206 IFAIPITSSREMLPLCLIFFCFL 138
IF + + + ++++PL L+FFC L
Sbjct: 105 IFGVEVATLKKIIPLGLMFFCIL 127
>At5g20885.1 68418.m02480 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 176
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 340 QTPLLMSSIRSCGGLPSTVHPTDCAVPRILLL 245
+TPLL ++ SCG P+ P+ AV R+L L
Sbjct: 139 RTPLLAANTTSCGDWPTKNEPS-WAVERLLYL 169
>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
DNA repair protein (rad1); almost identical to 5' repair
endonuclease (GI:8926611) [Arabidopsis thaliana]
Length = 956
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 314 KIMWRPALHSTSN*LCCAKNSFTEPERYRAI 222
+++W +LH+T+ K++ EP+ RAI
Sbjct: 841 RLLWSRSLHATAEIFTTLKSNQDEPDETRAI 871
>At3g57760.1 68416.m06434 protein kinase family protein contains
similarity to protein kinases
Length = 378
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Frame = +1
Query: 130 RDRKKQKNIKHNGNISLEDVI----GIAKIMRNRSMARYLSGSVKEFLAQH--SQLDVLW 291
R +K+++N+K NG + L+++I G ++N S + + + F + S++DV +
Sbjct: 10 RAKKRKRNVKENGEVVLKELIECCDGKCNPIKNFSYDQIIK-ATNNFCQSNRASRIDVYY 68
Query: 292 RAGRHMI 312
R + M+
Sbjct: 69 RCYKGML 75
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -1
Query: 128 GGSLRALMIRAAAEGTTAIWACLF*TVSCTVI-LR----PFQSLVA 6
GG+ M G+ A+W LF T CT++ LR P+ S++A
Sbjct: 50 GGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIA 95
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -1
Query: 128 GGSLRALMIRAAAEGTTAIWACLF*TVSCTVI-LR----PFQSLVA 6
GG+ M G+ A+W LF T CT++ LR P+ S++A
Sbjct: 50 GGTQSVSMNAPRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIA 95
>At2g30940.2 68415.m03773 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 447
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 106 IRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMAR-YLSGSVKEFLAQHSQLD 282
I L P + ++ ++ GN+ +E V G + ++ R YL +KE +A H +D
Sbjct: 320 IPTLIPSPGNMDEKIDVYSFGNMIMELVSGRVSVDQSSPHVRVYLVDWIKEMVANHMIVD 379
Query: 283 VL 288
VL
Sbjct: 380 VL 381
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,680,999
Number of Sequences: 28952
Number of extensions: 171501
Number of successful extensions: 507
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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