Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00105
(806 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 177 9e-45
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 177 9e-45
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 177 9e-45
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 162 3e-40
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 162 3e-40
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 108 9e-30
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 107 1e-23
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 67 2e-11
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 6e-11
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 7e-11
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 64 1e-10
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 64 1e-10
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 64 1e-10
SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0) 64 1e-10
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 64 1e-10
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 63 2e-10
SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0) 62 4e-10
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 56 4e-08
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 52 7e-07
SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039) 28 7.7
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 177 bits (431), Expect = 9e-45
Identities = 82/85 (96%), Positives = 85/85 (100%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNMNDLVSEYQQYQ+ATA+EE
Sbjct: 409 TEAESNMNDLVSEYQQYQDATAEEE 433
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 177 bits (431), Expect = 9e-45
Identities = 82/85 (96%), Positives = 85/85 (100%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 294 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 353
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNMNDLVSEYQQYQ+ATA+EE
Sbjct: 354 TEAESNMNDLVSEYQQYQDATAEEE 378
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 177 bits (431), Expect = 9e-45
Identities = 82/85 (96%), Positives = 85/85 (100%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VKTAVCDIPPRGLKM+ATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 349 VKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 408
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNMNDLVSEYQQYQ+ATA+EE
Sbjct: 409 TEAESNMNDLVSEYQQYQDATAEEE 433
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 162 bits (394), Expect = 3e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VKT VCDI P+GLKMAATF+GN+TAIQELFKR+ EQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 114 VKTTVCDIAPKGLKMAATFVGNNTAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEF 173
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNM+DL++EYQQYQEA AD E
Sbjct: 174 TEAESNMHDLIAEYQQYQEAEADIE 198
>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
Length = 271
Score = 162 bits (394), Expect = 3e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
VKT VCDI P+GLKMAATF+GN+TAIQELFKR+ EQFTAMFRRKAFLHWYTGEGMDEMEF
Sbjct: 176 VKTTVCDIAPKGLKMAATFVGNNTAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEF 235
Query: 181 TEAESNMNDLVSEYQQYQEATADEE 255
TEAESNM+DL++EYQQYQEA AD E
Sbjct: 236 TEAESNMHDLIAEYQQYQEAEADIE 260
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 108 bits (260), Expect(2) = 9e-30
Identities = 48/66 (72%), Positives = 56/66 (84%)
Frame = +1
Query: 1 VKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 180
+KTAVCD+PP GLK AATF+ NSTAIQE F+R +EQF AMFRR+AFLHWYT EGMD +EF
Sbjct: 168 MKTAVCDVPPVGLKNAATFLYNSTAIQEAFRRFTEQFAAMFRRRAFLHWYTTEGMDPLEF 227
Query: 181 TEAESN 198
TE + N
Sbjct: 228 TEIKRN 233
Score = 39.9 bits (89), Expect(2) = 9e-30
Identities = 14/26 (53%), Positives = 23/26 (88%)
Frame = +1
Query: 178 FTEAESNMNDLVSEYQQYQEATADEE 255
+ A+SN+NDL+SEYQQY++A +D++
Sbjct: 256 YFSADSNLNDLISEYQQYEDAKSDDD 281
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 107 bits (257), Expect = 1e-23
Identities = 46/83 (55%), Positives = 64/83 (77%)
Frame = +1
Query: 4 KTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT 183
K AVCD+PP +KM+A+ I ++TAIQELFKRI + MFRR+AFLHWYT EGMD +F
Sbjct: 255 KVAVCDVPPHDMKMSASCISSNTAIQELFKRIRLHYKLMFRRRAFLHWYTEEGMDSQQFE 314
Query: 184 EAESNMNDLVSEYQQYQEATADE 252
EA++++ DL+S YQQ ++ A++
Sbjct: 315 EADNDILDLISTYQQCEDMKAED 337
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 67.3 bits (157), Expect = 1e-11
Identities = 26/74 (35%), Positives = 48/74 (64%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 787 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 846
Query: 217 EYQQYQEATADEEQ 258
+Y++ + +E++
Sbjct: 847 DYEEVAVESVEEDE 860
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 356 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 415
Query: 217 EYQQ 228
+Y++
Sbjct: 416 DYEE 419
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 66.9 bits (156), Expect = 2e-11
Identities = 27/73 (36%), Positives = 47/73 (64%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 956 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 1015
Query: 217 EYQQYQEATADEE 255
+Y++ + +EE
Sbjct: 1016 DYEEVGVDSVEEE 1028
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 65.3 bits (152), Expect = 6e-11
Identities = 26/72 (36%), Positives = 46/72 (63%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 523 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 582
Query: 217 EYQQYQEATADE 252
+Y++ + D+
Sbjct: 583 DYEEVGADSPDD 594
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 64.9 bits (151), Expect = 7e-11
Identities = 26/72 (36%), Positives = 46/72 (63%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 217 EYQQYQEATADE 252
+Y++ + +E
Sbjct: 431 DYEEVGVDSVEE 442
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 355 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 414
Query: 217 EYQQ 228
+Y++
Sbjct: 415 DYEE 418
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 308 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 367
Query: 217 EYQQ 228
+Y++
Sbjct: 368 DYEE 371
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 742 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 801
Query: 217 EYQQ 228
+Y++
Sbjct: 802 DYEE 805
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 1151 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 1210
Query: 217 EYQQ 228
+Y++
Sbjct: 1211 DYEE 1214
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 336 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 395
Query: 217 EYQQ 228
+Y++
Sbjct: 396 DYEE 399
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 804 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 863
Query: 217 EYQQ 228
+Y++
Sbjct: 864 DYEE 867
Score = 64.1 bits (149), Expect = 1e-10
Identities = 24/64 (37%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TA+ E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 217 EYQQ 228
+Y++
Sbjct: 431 DYEE 434
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 296 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 355
Query: 217 EYQQ 228
+Y++
Sbjct: 356 DYEE 359
>SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 250
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 169 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 228
Query: 217 EYQQ 228
+Y++
Sbjct: 229 DYEE 232
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ A + N+TAI E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 371 VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 217 EYQQ 228
+Y++
Sbjct: 431 DYEE 434
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 63.3 bits (147), Expect = 2e-10
Identities = 24/73 (32%), Positives = 47/73 (64%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ + + N+TAI + + R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 69 VQRSVCMLSNTTAIADAWARLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 128
Query: 217 EYQQYQEATADEE 255
+Y++ + D +
Sbjct: 129 DYEEVGVDSVDND 141
>SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 232
Score = 62.5 bits (145), Expect = 4e-10
Identities = 23/64 (35%), Positives = 44/64 (68%)
Frame = +1
Query: 37 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 216
++ + + N+TAI + + R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 169 VQRSVCMLSNTTAIADAWARLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 228
Query: 217 EYQQ 228
+Y++
Sbjct: 229 DYEE 232
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 55.6 bits (128), Expect = 4e-08
Identities = 21/51 (41%), Positives = 35/51 (68%)
Frame = +1
Query: 76 IQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 228
I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 297 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 347
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 51.6 bits (118), Expect = 7e-07
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +1
Query: 4 KTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG-EGMDEMEF 180
KT +C +PP G + + N++ I+ F + ++F +++RKA +H YT +G++ +F
Sbjct: 397 KTGLCSVPPVGQPYSLLTLANNSCIKNTFVELKDRFMKLYKRKAHVHHYTHVDGLEVGQF 456
Query: 181 TEAESNMNDLVSEY 222
+ +++ L+ EY
Sbjct: 457 DDGLESLSWLIQEY 470
>SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 46.0 bits (104), Expect = 4e-05
Identities = 16/36 (44%), Positives = 27/36 (75%)
Frame = +1
Query: 121 FRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 228
+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 13 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 48
>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
Length = 566
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +2
Query: 599 ADQNSIPTNADSTRTPVPFYFCCTECIKFGCCHERQTFNCDGFSNRSFVSDDNQ 760
A QN S PV CC ++ H + T N +R V DDNQ
Sbjct: 489 APQNQHEDQRQSFHPPVLSAGCCIYSFQYTVTHIKGTDNASDVLSRLPVGDDNQ 542
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,087,023
Number of Sequences: 59808
Number of extensions: 419970
Number of successful extensions: 974
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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