Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP14_F_G22
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 453 NVKYEKDFKK--NDLTFNYYIHNTTESYKRKVVE 548
           N K +K F++  N+L FN    N   +YK  ++E
Sbjct: 42  NNKSKKYFEQTLNELNFNLNYVNKGVTYKHTIIE 75


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 82  AHCERNVGGNFLFFIIIXALAVYTSSKY*FLVV 180
           +HC      +FL FI++  +AV   + Y F+VV
Sbjct: 77  SHCMTITFASFLLFILLVQIAV---AVYAFIVV 106


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 525 SYKRKVVEEIEEMLAKYKLTDAYEE 599
           +Y  K  EE+EE+L K  +  A +E
Sbjct: 291 NYGIKAFEELEELLGKRNICIAIKE 315


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -1

Query: 228 CSCIHLCGLKMKPLCCDD*KL 166
           C C+  C  + +P+C  + K+
Sbjct: 104 CVCMRKCPRRHRPVCASNGKI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,665
Number of Sequences: 438
Number of extensions: 4532
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)