Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_G19
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   272   2e-74
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    29   0.47 
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    29   0.47 
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    29   0.47 
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   1.1  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   4.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   5.8  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   7.7  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  272 bits (667), Expect = 2e-74
 Identities = 131/177 (74%), Positives = 148/177 (83%)
 Frame = +1

Query: 34  AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 213
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 214 EKGRRIRELTSVVQKRFNIPEQSVELYAQKVATRGLCAIAQAESLRYKLIGGLAVRRACY 393
           EKGRRIRELT++VQKRF   E +VELYA+KV  RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 394 GVLRFIMESGARGCEVVVSGKLRGQRAKSMXFVXGLMIHSGXPCNDYVNTATRHVLL 564
           GVLR++ME+GA+GCEVV+SGKLR  RAKSM F  G MIHSG P  D++++ATRHVLL
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLL 179


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 270 SRAICRIVCSKGGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 407
           S+A  +   + GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 23  SKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 270 SRAICRIVCSKGGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 407
           S+A  +   + GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 23  SKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 270 SRAICRIVCSKGGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 407
           S+A  +   + GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 23  SKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 110 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 247
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 3   LFFLGSRCNHGR 38
           LFFLGS CN GR
Sbjct: 211 LFFLGSACNFGR 222


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 184 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAQKVATRGLCAI-AQAESLRYKL 360
           MATR Q       RR  E  + +QK +N  + ++EL  ++V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 361 IG 366
           +G
Sbjct: 784 LG 785


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 246 RSTEAIQHSRAICRIVCSKGGYSWPLRYRPGRISK 350
           +ST A  +     R++  KGG+   LR   GR+SK
Sbjct: 67  KSTSAHLNLTLCTRVLGGKGGFGSQLRAAGGRMSK 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,076
Number of Sequences: 5004
Number of extensions: 46320
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)