Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_F24
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   7.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 491 KCDSLGNKEGACEKMSVQYF*GGQ*VRLC 405
           KC++L      C + SV Y  G    +LC
Sbjct: 354 KCNTLERTPSKCSQTSVHYSNGQTHSQLC 382


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 530 LEAAACTEDNDIGKCDSLGNKEGACEKMSVQYF 432
           LEA   T+D DI     +GN   A  K  V+ F
Sbjct: 208 LEALCWTQDEDIICSTPIGNLSHALLKDPVKEF 240


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 249 VANESLRGGDLATQARVWQWASWS 320
           V +E L   D +  A +W W S S
Sbjct: 397 VFDELLLDADWSVNAGMWMWLSCS 420


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 530 LEAAACTEDNDIGKCDSLGNKEGACEKMSVQYF 432
           LEA   T+D D+     +GN   A  K  V+ F
Sbjct: 155 LEALCWTQDEDVICSTPIGNLSHALLKDPVKEF 187


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 488 CDSLGNKEGACEK 450
           C SLG   G CEK
Sbjct: 39  CHSLGKAGGHCEK 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,384
Number of Sequences: 438
Number of extensions: 3683
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)