Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_F14
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   4.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   8.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 217 QRLVGCRKWRQWQRAL 170
           + L+G R+W+Q+Q  L
Sbjct: 38  EELMGRRRWKQYQDTL 53


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 162 PGLTTICSTSCSRAVLGSSVS 100
           PG    C+TS + A L SS+S
Sbjct: 24  PGTIQACTTSPATASLESSLS 44


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 114 GSSVSEPKIIICSHHLPIFRVETIKTLQQER 22
           GSS+++ +++ C HH  I      +TL   R
Sbjct: 139 GSSLTKSRLMRCLHH-DIENAHIRRTLHMNR 168


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 94  QNNYLQPSFTNIPR*NNQ 41
           QN Y QPS  ++ R  NQ
Sbjct: 346 QNEYEQPSEEDLKRITNQ 363


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 84  ICSHHLPIFRVETIKTLQQERPAFC 10
           ICS   P+  +  ++ L ++  +FC
Sbjct: 503 ICSTATPMMVINMLQNLYEQFDSFC 527


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 159 GLTTICSTSCSRAVLGSSVS 100
           G +  CS S S+   GSS+S
Sbjct: 16  GYSNTCSNSQSQRSSGSSIS 35


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 159 GLTTICSTSCSRAVLGSSVS 100
           G +  CS S S+   GSS+S
Sbjct: 16  GYSNTCSNSQSQRSSGSSIS 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,611
Number of Sequences: 438
Number of extensions: 980
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)