Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_P01
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.7  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 470 MNKAIRSPFLVAHKVDELIGTVLGIIDVVRIVVAYTRTHGPAA 342
           +NK  ++P LVAH+ ++L G+    I+ V   +A    H  A+
Sbjct: 573 LNKIGKNPNLVAHREEDL-GSESKTINAVVNALAEQAAHASAS 614


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 470 MNKAIRSPFLVAHKVDELIGTVLGIIDVVRIVVAYTRTHGPAA 342
           +NK  ++P LVAH+ ++L G+    I+ V   +A    H  A+
Sbjct: 541 LNKIGKNPNLVAHREEDL-GSESKTINAVVNALAEQAAHASAS 582


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -3

Query: 455 RSPFLVAHKVDELIGTVLGII 393
           ++PFL++  + +++ TV GI+
Sbjct: 209 KTPFLISWGIAQVVTTVAGIV 229


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -3

Query: 455 RSPFLVAHKVDELIGTVLGII 393
           ++PFL++  + +++ TV GI+
Sbjct: 209 KTPFLISWGIAQVVTTVAGIV 229


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 385 TTSMMPKTVPINSSTLCATRNGDRIALFIAEGGPECFQQKTEN 513
           T S+   +  +N STL    + +  AL I       FQ+ T +
Sbjct: 185 TLSVQLLSCEVNGSTLVYIGDNEGFALIIYNNSDNSFQRLTSS 227


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 496 QQKTENLKTCFLNLKQSFPTVES 564
           +Q+T++L   F  L++  PT+ S
Sbjct: 263 RQRTQSLNEAFAALRKIIPTLPS 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,007
Number of Sequences: 438
Number of extensions: 3068
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)