Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_M22
(647 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.1
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.5
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 4.4
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 5.9
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 7.8
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 7.8
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 7.8
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 7.8
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 7.8
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 7.8
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 7.8
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 7.8
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 7.8
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 492 SWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHNXH 608
SW + G EF D + K+ + SG L GP + +
Sbjct: 138 SWHTDQGEEFVPGDDYDGKYLVLPSGELHIRDVGPEDGY 176
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 322 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 230
LSIS L L +FFL+ + P ++ +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 322 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 230
LSIS L L +FFL+ + P ++ +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 322 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 230
LSIS L L +FFL+ P ++ +G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.2 bits (45), Expect = 4.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 322 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 230
LSIS L L +FFL+ P + +G
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLG 300
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.8 bits (44), Expect = 5.9
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 401 LASSGDNAAIPTNPKTTIFPSVK 333
+ASS N T TTI P VK
Sbjct: 949 VASSASNVTNVTTNLTTILPPVK 971
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 435 PEPFPVYY 458
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 435 PEPFPVYY 458
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 435 PEPFPVYY 458
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 435 PEPFPVYY 458
P PFPVYY
Sbjct: 114 PVPFPVYY 121
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 435 PEPFPVYY 458
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 435 PEPFPVYY 458
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 435 PEPFPVYY 458
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 435 PEPFPVYY 458
P PFPVYY
Sbjct: 347 PVPFPVYY 354
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 435 PEPFPVYY 458
P PFPVYY
Sbjct: 336 PVPFPVYY 343
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,037
Number of Sequences: 438
Number of extensions: 4539
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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