Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_L07
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 344 YREIELNGIMGTPTAMNAESE 406
           +  +ELN ++GTP A N  +E
Sbjct: 36  FSPMELNALVGTPAAPNMPAE 56


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 488 QRDQEMLELRSQLDK 532
           +RD E+ ELRS LDK
Sbjct: 27  RRDAEIQELRSHLDK 41


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 552 YGNTLCSLSSCERSSNISWSRCLSNASSS 466
           Y NT CS S  +RSS  S SR  + + SS
Sbjct: 17  YSNT-CSNSQSQRSSGSSISRNSNRSESS 44


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 552 YGNTLCSLSSCERSSNISWSRCLSNASSS 466
           Y NT CS S  +RSS  S SR  + + SS
Sbjct: 17  YSNT-CSNSQSQRSSGSSISRNSNRSESS 44


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 354 ISLYVSSNARLSPLTVGATVSAPPPVFTKTL 262
           +SL V++   ++  T G   S PP  +TK +
Sbjct: 274 VSLGVTTLLTMATQTSGINASLPPVSYTKAI 304


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 354 ISLYVSSNARLSPLTVGATVSAPPPVFTKTL 262
           +SL V++   ++  T G   S PP  +TK +
Sbjct: 274 VSLGVTTLLTMATQTSGINASLPPVSYTKAI 304


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 86  EFXRGSAGYVWVACVRAVRRDRG 18
           E  +GS  Y WV       R+RG
Sbjct: 48  EMGKGSFKYAWVLDKLKAERERG 70


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 86  EFXRGSAGYVWVACVRAVRRDRG 18
           E  +GS  Y WV       R+RG
Sbjct: 48  EMGKGSFKYAWVLDKLKAERERG 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,488
Number of Sequences: 438
Number of extensions: 2883
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)