Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_J02
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 316 NAGLSCCNHVALVFYRP*SE*YMPVSLPCCL 224
           N G   C  V L+F R  S   + + +PCC+
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIYIPCCM 254


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 316 NAGLSCCNHVALVFYRP*SE*YMPVSLPCCL 224
           N G   C  V L+F R  S   + + +PCC+
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIYIPCCM 254


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 245 WHILLRSRAIENQCY 289
           WH +L +  + N CY
Sbjct: 86  WHGVLNATVLPNSCY 100


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 245 WHILLRSRAIENQCY 289
           WH +L +  + N CY
Sbjct: 86  WHGVLNATVLPNSCY 100


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 543 CSXSNGRDLRKDKVYKE 493
           CS    R+ RKD+ Y++
Sbjct: 4   CSRDRNREYRKDRRYEK 20


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 543 CSXSNGRDLRKDKVYKE 493
           CS    R+ RKD+ Y++
Sbjct: 4   CSRDRNREYRKDRRYEK 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,564
Number of Sequences: 438
Number of extensions: 2884
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)