Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_H09
         (455 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   1.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.4  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 49  LWVVTLGSRITLRNHAKRVVQTSXVH 126
           L + T+G +I  R H +R+++   VH
Sbjct: 272 LCIQTIGGQIKPRKHEQRLLRNVGVH 297


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -3

Query: 354 FDSAFLNNCKRNSADFLGQRXLCCAKLLCLSTATNAAVEATEWNTLFLFNHVFEVTNSTT 175
           F+  FLN+  ++  DF+ +   CC  +  LS   +  + A+  N+    N+   ++NS T
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCG-VHSLSDYNDKPIPASCCNS--PENNTCSISNSYT 179


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 114 GLNHALCMISQGYP 73
           GLNH   M++  YP
Sbjct: 227 GLNHFYFMLNHNYP 240


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 114 GLNHALCMISQGYP 73
           GLNH   M++  YP
Sbjct: 227 GLNHFYFMLNHNYP 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,674
Number of Sequences: 438
Number of extensions: 2286
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)