Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F06
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36818-1|AAA96658.1| 1149|Homo sapiens 51C protein protein.            32   1.5  
AF174496-1|AAF36537.1|  426|Homo sapiens glucocorticoid receptor...    32   1.5  
AK074590-1|BAC11078.1|  159|Homo sapiens protein ( Homo sapiens ...    32   2.0  
BC032715-1|AAH32715.1|  310|Homo sapiens BBS9 protein protein.         30   6.2  

>L36818-1|AAA96658.1| 1149|Homo sapiens 51C protein protein.
          Length = 1149

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +1

Query: 7    ACVVWQMRRQAARLRLD*SLPAPISVLPGRFPMERRSPNYIQSATSASASRPQGRRSGEH 186
            +C V QM +  + +    + PA  ++LPG  P+E + P         +   P     GEH
Sbjct: 1056 SCSVLQMAKTLSEVDYAPAGPAASALLPG--PLELQPPPGTALGLWPAPQLPSTPHPGEH 1113

Query: 187  ARRL*RDGAVPVNHPGR 237
              R  R G+VP    G+
Sbjct: 1114 PGRPGRGGSVPAGRAGQ 1130


>AF174496-1|AAF36537.1|  426|Homo sapiens glucocorticoid receptor
           AF-1 specific elongation factor protein.
          Length = 426

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 93  SRQDGNWSGEASIEA*SCRLPSHLPDD 13
           +R+DGN SG   +EA  C LP H P D
Sbjct: 181 TRKDGNASGTTLLEALDCILPPHSPTD 207


>AK074590-1|BAC11078.1|  159|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90109 fis, clone HEMBA1006544. ).
          Length = 159

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 112 RSPNYIQSATSASASRPQGR--RSGEHARRL*RDGAVPVNHPGRDLRLRTLQRRYRGSG- 282
           R+ +   S+ S+S SR  G   RSG HAR   R  + P +   R  R R+  RR+ G G 
Sbjct: 39  RTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRPRSRSRRYSRSRSRGRRHSGGGS 98

Query: 283 RDATWTSRRSLR 318
           RD    SR   R
Sbjct: 99  RDGHRYSRSPAR 110


>BC032715-1|AAH32715.1|  310|Homo sapiens BBS9 protein protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 346 TQVPSLP-AVYEGCAWRSMWRHVLTRDN 266
           TQ+P +P AV  GC   S+W+H+L R +
Sbjct: 279 TQLPHIPVAVRVGCLQFSLWKHLLPRSS 306


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,392,574
Number of Sequences: 237096
Number of extensions: 2163102
Number of successful extensions: 4521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4511
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)