Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F06
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.84 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 90  RQDGNWSGEASIEA*SCRLPSHLPDD 13
           R+DGN  G+  IEA    LP   P D
Sbjct: 218 RKDGNADGKTLIEALDAILPPSRPTD 243


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -2

Query: 481 IHVW*NKTLLNLPSWI--ISVTRTFESMMERRTG 386
           I +W NK  + +P W   I  T T+ S+   R G
Sbjct: 72  IEIWRNKLFVTVPRWRNGIPATLTYISLDTNRGG 105


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = -3

Query: 312  AAPGGPCGVTS*PAITAL--QRPQPEITSGVVHGYR 211
            A P   CG  S P    L    PQP +T  V H YR
Sbjct: 1268 APPAYSCGTVSVPQQQQLPPSSPQPRLT--VNHAYR 1301


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 463 CFTKHVYRSLSKIVNGK*DFDVL 531
           C+T  + + L    NG  DFD++
Sbjct: 67  CYTTCIMKLLRTFKNGNFDFDMI 89


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 268  YRGSGRDATWTSRRSLRILPA 330
            Y+G G      S R+++ILP+
Sbjct: 1346 YKGQGEQIRTDSTRNIQILPS 1366


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 268  YRGSGRDATWTSRRSLRILPA 330
            Y+G G      S R+++ILP+
Sbjct: 1342 YKGQGEQIRTDSTRNIQILPS 1362


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -2

Query: 481 IHVW*NKTLLNLPSW 437
           + VW +K  + LP W
Sbjct: 192 LEVWRDKVFITLPKW 206


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 5/17 (29%), Positives = 10/17 (58%)
 Frame = -2

Query: 487 NDIHVW*NKTLLNLPSW 437
           N + +W +K  + +P W
Sbjct: 54  NGMQIWNDKVFITIPRW 70


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 97  TVPARRKLERGGFNRGVVLPLAVSSARR 14
           ++ A+R+++  G N    + LAV +  R
Sbjct: 881 SIAAQRRIQSNGLNDPTTVSLAVDTVAR 908


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,240
Number of Sequences: 438
Number of extensions: 4089
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)