Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_C06
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 150 PS*IIRYSGIHFTILYCCKTLEYYI 76
           PS I +YS I F + + C  L Y+I
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 150 PS*IIRYSGIHFTILYCCKTLEYYI 76
           PS I +YS I F + + C  L Y+I
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNLMYWI 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 150 PS*IIRYSGIHFTILYCCKTLEYYI 76
           PS I +YS I F + + C  L Y+I
Sbjct: 339 PSDIDKYSRIVFPVCFVCFNLMYWI 363


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 441 KCNKSVERQRARTFVTWYK 497
           +C  S   Q    F+TWYK
Sbjct: 351 RCEVSTHPQAGPHFITWYK 369


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 441 KCNKSVERQRARTFVTWYK 497
           +C  S   Q    F+TWYK
Sbjct: 351 RCEVSTHPQAGPHFITWYK 369


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 188 IFPLITETSHYYTKNFWKLTFRL 256
           +FP   +  H Y +N W L+ +L
Sbjct: 482 VFPNDIKVDHEYDQNVWVLSNKL 504


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 120  HFTILYCCKTL-EYYIFVVKERKN 52
            H T    C T  EYY   VK++KN
Sbjct: 958  HITTTIDCSTQSEYYELEVKDQKN 981


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,546
Number of Sequences: 438
Number of extensions: 3239
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)