Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_P14
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   0.77 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.5  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 19  TSREKMADNKLYEILGVSKNASESEIKRNYHKLAKEFH 132
           T RE+  + K+   L  + N + +  K NY+   K+ +
Sbjct: 304 TERERSKERKIISSLSNNYNYNNNNYKYNYNNYNKKLY 341


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +2

Query: 227 YTGSKDYRKAAKEEGFPADEIFW*FPLGNPXG 322
           +    D R   K +GFP  ++ W    G+  G
Sbjct: 690 FAQGSDARVECKADGFPKPQVTWKKAAGDTPG 721



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 212  DKCMTYTGSKDYRKAAKEEGFPADEIFW 295
            D   T T  +D +      G PA E+ W
Sbjct: 1283 DDKFTATYKEDVKLPCLAVGVPAPEVTW 1310


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +1

Query: 13  SSTSREKMADNKLYEILGVSKNASESEIKRNYHKLAKEFHPD 138
           SSTS E+  + K    L   K       ++     A  FH D
Sbjct: 756 SSTSSEESREEKATTSLEAEKREKSEHCEKGKEYYAASFHTD 797


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +2

Query: 197 PILRKDKCMTYTGSKDYRKAAKEEGFPADEIFW 295
           P +R    +T    +  R      G+P +EI W
Sbjct: 520 PYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +2

Query: 197 PILRKDKCMTYTGSKDYRKAAKEEGFPADEIFW 295
           P +R    +T    +  R      G+P +EI W
Sbjct: 520 PYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,412
Number of Sequences: 438
Number of extensions: 2022
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)