Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_N08
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 331 RHQYCQSWILQVARQRQTPQTTCHSKS 411
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 303 YFSLVCSETNVQSLSKFK 250
           YFS+VC      SL  FK
Sbjct: 11  YFSIVCQAKAHYSLRDFK 28


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 271 DISL*TDEAEVCICSXWQXPRHQYCQ 348
           D+S    E + CI    Q  R QYC+
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 271 DISL*TDEAEVCICSXWQXPRHQYCQ 348
           D+S    E + CI    Q  R QYC+
Sbjct: 141 DLSYACREEKSCIIDKRQRNRCQYCR 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,829
Number of Sequences: 438
Number of extensions: 2240
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)