Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_M24
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 227  MYEVMIGGWGNAKSVIRKNRTKPDK 301
            ++   +G W  +K  +R  R KP K
Sbjct: 1017 VFRESVGAWAYSKYGLRFLRAKPGK 1041


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -1

Query: 370 AIPTNPRTTXFPSVKNS----GAFNXNLIGLGSIFPDDALSVSPASNH-HL 233
           ++P +P  +    V++S    G  + NL+    + P+ +L  S AS+H HL
Sbjct: 240 SLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHSHL 290


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 114 QPSIPILPXFQVD 152
           QPSIP+ P F  D
Sbjct: 114 QPSIPLEPDFTSD 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,763
Number of Sequences: 438
Number of extensions: 1476
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)