Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_M06
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 117 LGCKVSEHWFKVGGTH 70
           +GC  SEH+F+ GG +
Sbjct: 330 IGCWNSEHFFEYGGNN 345


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 284 GEYEELGVRWKLRVESQQDLNRQVVKSD 367
           GEYEEL  R   ++ S   L  Q VK D
Sbjct: 752 GEYEELRERAYTKILSNGTLLLQHVKED 779


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 284 GEYEELGVRWKLRVESQQDLNRQVVKSD 367
           GEYEEL  R   ++ S   L  Q VK D
Sbjct: 748 GEYEELRERAYTKILSNGTLLLQHVKED 775


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 354 WSKVTTPASGYPSWTLR*QHRVRKG 428
           W K  TP +  P+W +    RVR G
Sbjct: 343 WIK-GTPQNNVPNWVMGNHDRVRVG 366


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 177 YDQGYCSPGYRT 212
           Y QG+C P  RT
Sbjct: 20  YKQGFCQPTQRT 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,096
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)