Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_L13
(505 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 23 2.4
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 4.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.6
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 9.6
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 22.6 bits (46), Expect = 2.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 190 YRRKFKKGQEEE 225
YRR FKK QEE+
Sbjct: 259 YRRNFKKMQEEK 270
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.2
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = +1
Query: 64 ISRPWQDHGLKW 99
+++ W DH LKW
Sbjct: 58 VTQIWTDHHLKW 69
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 365 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 270
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 365 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 270
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 365 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 270
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 365 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 270
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 365 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 270
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 365 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 270
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 365 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 270
FAA++ LC + + F + I+ L AP I
Sbjct: 495 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 526
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 365 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 270
FAA++ LC + + F + I+ L AP I
Sbjct: 495 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 526
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 20.6 bits (41), Expect = 9.6
Identities = 5/12 (41%), Positives = 7/12 (58%)
Frame = +1
Query: 64 ISRPWQDHGLKW 99
+ WQDH +W
Sbjct: 73 LEHEWQDHKFQW 84
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,621
Number of Sequences: 438
Number of extensions: 1954
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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