Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_L12
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.75 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.2  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 153 LWLNSARSKIKDDNPGLKV 209
           +W  + R+K K  NPGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 68   FCY*GGRARNAYQTPL 21
            +CY GG AR AY+  L
Sbjct: 954  WCYYGGDARPAYRRRL 969


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 297  QYIVDLESFNANGGGPV 347
            QY V +++FN  G GP+
Sbjct: 1052 QYSVVVQAFNKVGSGPM 1068


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 573 LKXE*TKYSFHGPEFKMINSKTLKL 499
           +K   + YS+H  +FK + ++  K+
Sbjct: 1   MKRNISNYSYHDEKFKQLRNEDNKI 25


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 573 LKXE*TKYSFHGPEFKMINSKTLKL 499
           +K   + YS+H  +FK + ++  K+
Sbjct: 1   MKRNISNYSYHDEKFKQLRNEDNKI 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,375
Number of Sequences: 438
Number of extensions: 2565
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)