Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_G19
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 79 2e-15
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 0.64
U50312-4|AAA92321.1| 542|Caenorhabditis elegans Temporarily ass... 28 4.5
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 27 7.9
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 27 7.9
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 7.9
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 27 7.9
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 79.0 bits (186), Expect = 2e-15
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = +2
Query: 380 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPXRYVICTS 556
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 557 TRISLGNFKLPKH 595
++++ K+P+H
Sbjct: 127 LKVNVSGVKIPEH 139
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 116 RNYDLGNGVMRFSKSKMFHKKAKYK 190
RN+DL GV+RFS S++ KK + K
Sbjct: 12 RNFDLSPGVLRFSASRLRLKKGEKK 36
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 311 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 445
FYPT+ +A S G P + PN ++ V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>U50312-4|AAA92321.1| 542|Caenorhabditis elegans Temporarily
assigned gene nameprotein 38 protein.
Length = 542
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Frame = -3
Query: 70 GSRLGHRFRLCWS----HIQTGFK 11
GSR GH LCW+ H Q G+K
Sbjct: 379 GSRAGHNIALCWAAMLYHAQEGYK 402
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 525 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 355
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 525 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 355
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 525 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 355
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 525 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 355
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 525 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 355
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 525 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 355
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 525 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 355
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 525 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 355
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 525 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 355
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,244
Number of Sequences: 27780
Number of extensions: 290630
Number of successful extensions: 632
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -