Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G07
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    43   2e-06

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 42.7 bits (96), Expect = 2e-06
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
 Frame = +1

Query: 274 VALVTGGSSGLGKATAELLVKQGGRVVICDLPSTKGQNT----AKSLGENAVXAPVDVTS 441
           VALVTG +SG+GK   E LV +G + VI   P      T     KS     V    D+++
Sbjct: 9   VALVTGANSGIGKCLIECLVGKGMK-VIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSN 67

Query: 442 EDDVXEALQITXDKFGRLDALINCAGV 522
           ++D+ + ++      G +D LIN A +
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNATI 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,676
Number of Sequences: 438
Number of extensions: 2426
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)