Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G03
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   3.5  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 350 DCDLLKNFPSAATKIEINNTTSFYPPS 430
           DC LLK   +  T+  +N TT F PP+
Sbjct: 290 DC-LLKKERNGPTQTTLNATTLFCPPN 315


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 350 DCDLLKNFPSAATKIEINNTTSFYPPS 430
           DC LLK   +  T+  +N TT F PP+
Sbjct: 380 DC-LLKKERNGPTQTTLNATTLFCPPN 405


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +3

Query: 108 CLHAQYKNACQNGALTGQISPSSQNTNIIRHQSLW---TFIRIRGTKSLQQ 251
           C++ Q  N C  G L G + P    +      S +   TF+R  G  S+ Q
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSPYRNLTFVRREGEFSVLQ 235


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 254 SASQKESWAAAIDLLTNDECRLLLEVEDFFNDDCDLLKNFPSAATKIEINNTTSFYPPSP 433
           S SQ+++ AA ++    DE RLL  V     D CD  ++    A  +     T  Y   P
Sbjct: 161 SRSQEKAVAAELE----DEQRLLATVVQAHLDTCDFTRD--KVAPILVRARETPNYTACP 214

Query: 434 PEL 442
           P L
Sbjct: 215 PTL 217


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 385 CSARKVFKQITIIIEEILNFEQQTALIVSEQID 287
           CS   V   IT + + +  F ++ AL +SE ++
Sbjct: 135 CSVNDVNMTITELTDPVKEFWERRALQISEGVE 167


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 87  NRLHTSVCLHAQYKNACQNGALTGQISPS 173
           N L  ++ +  Q       GA TG+ISP+
Sbjct: 52  NILPNNISIAGQNTYKVAKGAFTGEISPA 80


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 448  QVPPNSLTIFCSQLD 492
            +VPPN LT   S+LD
Sbjct: 1229 KVPPNQLTHEASELD 1243


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 116 VKAHAGVQTIRY 81
           VKA +GVQT+R+
Sbjct: 59  VKAISGVQTVRF 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,585
Number of Sequences: 438
Number of extensions: 2888
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)