Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_F16
(529 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 23 1.5
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 22 3.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 7.8
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 7.8
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 7.8
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 7.8
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 7.8
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 7.8
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 7.8
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 7.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.8
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 7.8
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 7.8
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 23.4 bits (48), Expect = 1.5
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -2
Query: 405 SRDDLRAAGLQEYGLLQRLQHVVNNFRNPLSGYIHRICG 289
SRD L + + + Q ++H+ + + P IH + G
Sbjct: 304 SRDFLSSLAFRVFQSTQYIRHIKSPYHTPEPDCIHELLG 342
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 22.2 bits (45), Expect = 3.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 407 IPAMTCALRVCRNMG 363
+ ++TCAL+ C N G
Sbjct: 161 LKSITCALQFCHNAG 175
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 336 NNFRNPLSGYIHRICGT 286
N+ NP SGYI GT
Sbjct: 356 NSAANPPSGYIRSAFGT 372
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 336 NNFRNPLSGYIHRICGT 286
N+ NP SGYI GT
Sbjct: 356 NSAANPPSGYIRSAFGT 372
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 336 NNFRNPLSGYIHRICGT 286
N+ NP SGYI GT
Sbjct: 356 NSAANPPSGYIRSAFGT 372
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 336 NNFRNPLSGYIHRICGT 286
N+ NP SGYI GT
Sbjct: 356 NSAANPPSGYIRSAFGT 372
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 336 NNFRNPLSGYIHRICGT 286
N+ NP SGYI GT
Sbjct: 356 NSAANPPSGYIRSAFGT 372
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 336 NNFRNPLSGYIHRICGT 286
N+ NP SGYI GT
Sbjct: 356 NSAANPPSGYIRSAFGT 372
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 84 NNNSLSNNYNYNNNYNNYNK 103
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 84 NNNSLSNNYNYNNNYNNYNK 103
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 84 NNNSLSNNYNYNNNYNNYNK 103
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 84 NNNSLSNNYNYNNNYNNYNK 103
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 84 NNNSLSNNYNYNNNYNNYNK 103
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 84 NNNSLSNNYNYNNNYNNYNK 103
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 84 NNNSLSNNYNYNNNYNNYNK 103
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 84 NNNSLSNNYNYNNNYNNYNK 103
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 336 NNFRNPLSGYIHRICGT 286
N+ NP SGYI GT
Sbjct: 424 NSAANPPSGYIRSAFGT 440
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 336 NNFRNPLSGYIHRICGT 286
N+ NP SGYI GT
Sbjct: 424 NSAANPPSGYIRSAFGT 440
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 317 NNNSLSNNYNYNNNYNNYNK 336
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 7.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 255 DNNL*SNSQNEYHRYGEYNR 314
+NN SN+ N + Y YN+
Sbjct: 317 NNNSLSNNYNYNNNYNNYNK 336
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,851
Number of Sequences: 438
Number of extensions: 3020
Number of successful extensions: 23
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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