Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_F09
         (556 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004822-1|AAH04822.1|  481|Homo sapiens pseudouridylate synthas...    88   2e-17
AK055702-1|BAB70990.1|  481|Homo sapiens protein ( Homo sapiens ...    88   2e-17
BC035024-1|AAH35024.1|  520|Homo sapiens chromosome 16 open read...    31   3.6  
AF447587-1|AAM22870.1|  520|Homo sapiens unknown protein.              31   3.6  

>BC004822-1|AAH04822.1|  481|Homo sapiens pseudouridylate synthase 3
           protein.
          Length = 481

 Score = 88.2 bits (209), Expect = 2e-17
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +2

Query: 347 QREFMFEKCHYRHVLLRVSYLGWEYQXLAVQENTTQTVEYHLFEXLXRACLIQSRETSNH 526
           +R F F     RHV LR++Y+GW YQ  A QENT  T+E  LFE L +  L++SR+TSN+
Sbjct: 52  KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNY 111

Query: 527 HRCGRTDQG 553
           HRCGRTD+G
Sbjct: 112 HRCGRTDKG 120


>AK055702-1|BAB70990.1|  481|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31140 fis, clone IMR322001218, highly similar to
           Mus musculus pseudouridine synthase 3 (Pus3) mRNA. ).
          Length = 481

 Score = 88.2 bits (209), Expect = 2e-17
 Identities = 38/69 (55%), Positives = 49/69 (71%)
 Frame = +2

Query: 347 QREFMFEKCHYRHVLLRVSYLGWEYQXLAVQENTTQTVEYHLFEXLXRACLIQSRETSNH 526
           +R F F     RHV LR++Y+GW YQ  A QENT  T+E  LFE L +  L++SR+TSN+
Sbjct: 52  KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNY 111

Query: 527 HRCGRTDQG 553
           HRCGRTD+G
Sbjct: 112 HRCGRTDKG 120


>BC035024-1|AAH35024.1|  520|Homo sapiens chromosome 16 open reading
           frame 71 protein.
          Length = 520

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +1

Query: 184 KQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCRWPKAEKSRPKRIYV 363
           ++ +NR A R+E  K+ + D+++K+ +     T       K  PC    A +S P+    
Sbjct: 191 QESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPCH---AAESAPRS--- 244

Query: 364 *KMPLSSCPPKG 399
            KMPL   PP+G
Sbjct: 245 -KMPLVE-PPEG 254


>AF447587-1|AAM22870.1|  520|Homo sapiens unknown protein.
          Length = 520

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +1

Query: 184 KQKINRNATREELLKLDKNDLVEKIIQLQAHNTQLKNIINKTTPCRWPKAEKSRPKRIYV 363
           ++ +NR A R+E  K+ + D+++K+ +     T       K  PC    A +S P+    
Sbjct: 191 QESVNRRALRQERRKMIETDILQKVTRDACGPTSSDKGGVKEAPCH---AAESAPRS--- 244

Query: 364 *KMPLSSCPPKG 399
            KMPL   PP+G
Sbjct: 245 -KMPLVE-PPEG 254


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,712,079
Number of Sequences: 237096
Number of extensions: 1685287
Number of successful extensions: 3229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3229
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)