Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_F09
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 143 CFRYMSYSLIQPYIP 99
           CFR +   +++PY+P
Sbjct: 272 CFRLLMNDILRPYVP 286


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 143 CFRYMSYSLIQPYIP 99
           CFR +   +++PY+P
Sbjct: 187 CFRLLMNDILRPYVP 201


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 143 CFRYMSYSLIQPYIP 99
           CFR +   +++PY+P
Sbjct: 506 CFRLLMNDILRPYVP 520


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 553 PLVCTTTSVMIRGF 512
           PLV  TTS ++RGF
Sbjct: 37  PLVVETTSGLVRGF 50


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 553 PLVCTTTSVMIRGF 512
           PLV  TTS ++RGF
Sbjct: 37  PLVVETTSGLVRGF 50


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 219 FLSCCVPVNLLFWWQFFHI 163
           F  C V  NL++W  + HI
Sbjct: 412 FPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 219 FLSCCVPVNLLFWWQFFHI 163
           F  C V  NL++W  + HI
Sbjct: 412 FPVCFVCFNLMYWIIYLHI 430


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
 Frame = -3

Query: 308 VLFMMFFSCVL--WA 270
           +LF+MFF C+   WA
Sbjct: 455 LLFLMFFECIAISWA 469


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
 Frame = -3

Query: 308 VLFMMFFSCVL--WA 270
           +LF+MFF C+   WA
Sbjct: 508 LLFLMFFECIAISWA 522


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 24  VSVICSSLLHN*NTYVNLSVHINY 95
           +S + +  +HN N Y N + + NY
Sbjct: 315 ISSLSNKTIHNNNNYNNNNYNNNY 338


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 365 EKCHYRHVLL 394
           +K HYRH+LL
Sbjct: 4   QKEHYRHILL 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,064
Number of Sequences: 438
Number of extensions: 3526
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)