Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_D09
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.23 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.23 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.53 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   1.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 354 TLALPWIRCWFCV 392
           TLA+ WI C+FC+
Sbjct: 212 TLAVVWIMCYFCI 224


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 354 TLALPWIRCWFCV 392
           TLA+ WI C+FC+
Sbjct: 265 TLAVVWIMCYFCI 277


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 354 TLALPWIRCWFCV 392
           TL L WI C+FC+
Sbjct: 179 TLLLVWILCYFCI 191


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +3

Query: 168 LFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLXNDNGQFGVKC 299
           L    +WFII A + +  ++   A    V +   ++N     +C
Sbjct: 231 LIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAEC 274


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +3

Query: 168 LFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLXNDNGQFGVKC 299
           L    +WFII A + +  ++   A    V +   ++N     +C
Sbjct: 107 LIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAEC 150


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 278 WSIRCQMHRFVEKHTQVVAW 337
           + + C +HR    H Q +AW
Sbjct: 542 YCVACGLHRDTYIHAQQIAW 561


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 337 GPRGARLWLFLGFVVGFASLIAACWILFANYVN 435
           GPR    W+    +   AS++  C I    Y++
Sbjct: 94  GPRFCDTWIAFDVMCSTASILNLCAISLDRYIH 126


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 166 CCFSQDGGL 192
           CCF+QD GL
Sbjct: 446 CCFAQDDGL 454


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 385 FASLIAACWILFANYV 432
           FA L    WI+FA Y+
Sbjct: 413 FAVLNVTYWIMFAEYI 428


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 372 SKEEPKSGTTRSHATTCV 319
           S    KSG  RSH  +C+
Sbjct: 278 SSTSKKSGIVRSHQQSCI 295


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/30 (23%), Positives = 11/30 (36%)
 Frame = +3

Query: 300 TGSWRNIHRWLHGTAWCQTLALPWIRCWFC 389
           + +W     W+ G  WC       +  W C
Sbjct: 122 SATWEVFKVWIFGDLWCSIWLA--VDVWMC 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,518
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)