Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C13
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   0.78 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   4.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 0.78
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 228 CLCHXCGSRRFCCF 187
           C C  C S+  CCF
Sbjct: 435 CECKTCNSKTKCCF 448


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 42  YALTNLXXLXIMRQSILLILAVCAFAA 122
           YA+T          S+L++  VC F A
Sbjct: 142 YAVTKSAMFFFAATSLLVVAEVCYFTA 168


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +1

Query: 232 GNKPIICAPTTPCAWTVYSPVSXMIQTNMTN 324
           G+K  I A T PC W        M    + N
Sbjct: 289 GSKVPIDANTKPCTWAARPWQGYMTNNGVNN 319


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +1

Query: 232 GNKPIICAPTTPCAWTVYSPVSXMIQTNMTN 324
           G+K  I A T PC W        M    + N
Sbjct: 289 GSKVPIDANTKPCTWAARPWQGYMTNNGVNN 319


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +1

Query: 232 GNKPIICAPTTPCAWTVYSPVSXMIQTNMTN 324
           G+K  I A T PC W        M    + N
Sbjct: 289 GSKVPIDANTKPCTWAARPWQGYMTNNGVNN 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,168
Number of Sequences: 438
Number of extensions: 1275
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)