Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C12
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 128 MNTPYNTQLLKIICKQVRHTSPSYRI 51
           +N   + Q++  +CK +  TS  YR+
Sbjct: 15  INVLLHGQVICFVCKDITSTSALYRL 40


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 79  TCLQIIFNSCVLYGVFIQNNYV 144
           TC+QI+FN     G  + + Y+
Sbjct: 201 TCIQIVFNLRRRLGYHLFHTYI 222


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 79  TCLQIIFNSCVLYGVFIQNNYVELC 153
           TCL+++F      G ++ + Y+  C
Sbjct: 232 TCLEVVFVLKRRLGYYLFHTYIPTC 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,869
Number of Sequences: 438
Number of extensions: 2831
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)