Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C02
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   4.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 403 CTIPSFIXCFLVVLTYY 353
           C +PSF+  F+ VL+++
Sbjct: 124 CVVPSFVADFVKVLSWH 140


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 255 LFRKRTEARPPSKTPLPVFTMPSVRHM 175
           LF+  +  +P  + PLP  T P   +M
Sbjct: 29  LFKAGSAEQPKEQEPLPPVTPPQGENM 55


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 254 FLERELRQDHPVK 216
           FLERELR+ H  K
Sbjct: 613 FLERELRKAHQEK 625


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 263 ISFFLERELRQDHPVKLHCLS 201
           ++F +ER L   HP++++ +S
Sbjct: 133 VAFSMERYLAICHPLRVYTIS 153


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 367 VLTYYILCSICLI*FMFTVCISDTDAY 287
           +L  Y +   CL+  MF  CI+ + A+
Sbjct: 444 LLDSYAVSGFCLLFLMFFECIAISWAF 470


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 367 VLTYYILCSICLI*FMFTVCISDTDAY 287
           +L  Y +   CL+  MF  CI+ + A+
Sbjct: 497 LLDSYAVSGFCLLFLMFFECIAISWAF 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,142
Number of Sequences: 438
Number of extensions: 2309
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)