Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_C01
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.40 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.6  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 0.40
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 151 SADSVQQGSIPG-SIRADSV*ELRCRHRSGWKTSGTGSVGYR 273
           +A S   G  P  +I ADS  EL  R R G+K +G   + Y+
Sbjct: 168 TAASTVLGFFPALNIVADSFIELIRRQRVGYKVTGFEELAYK 209


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 233 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 334
           V G  +E   W+ A +E  D LR    PD  +++
Sbjct: 542 VAGYPIEEIKWERANRELPDDLRQKVLPDGTLVI 575


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 233 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 334
           V G  +E   W+ A +E  D LR    PD  +++
Sbjct: 542 VAGYPIEEIKWERANRELPDDLRQKVLPDGTLVI 575


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 234 WMENKWNWLCGIPLAKKIT 290
           W+ N W   C    AKK+T
Sbjct: 83  WLHNIWRPDCFFKNAKKVT 101


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 189  TSGN*SLLNTISRHVLPHAPSPTIT 115
            T G+ ++ + +  H  PH+P  T+T
Sbjct: 1351 TFGHDTVTHQLIVHAPPHSPQITLT 1375


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 219 LPTSKWMENKWN 254
           + T+ W+E +WN
Sbjct: 80  MTTNVWVEQRWN 91


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 158 IVFSKDQFPEVYVPTVFENYVADIEVD 238
           I F    + EVY   +++  VAD+  D
Sbjct: 427 ITFQYTDWEEVYNGYIYQKMVADVVGD 453


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 158 IVFSKDQFPEVYVPTVFENYVADIEVD 238
           I F    + EVY   +++  VAD+  D
Sbjct: 427 ITFQYTDWEEVYNGYIYQKMVADVVGD 453


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 219 LPTSKWMENKWN 254
           + T+ W+E +WN
Sbjct: 67  MTTNVWVEQEWN 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,316
Number of Sequences: 438
Number of extensions: 2258
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)