Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_B03
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.5  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.6  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 101 TKYIHSLSLH 130
           TKY HSL LH
Sbjct: 54  TKYCHSLKLH 63


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 607 NFHNGIFINWLGLVYDIXFVTTRSLDILQTIMFFNWPVVSLRP 479
           N++N    N+  L Y+I ++    + +   I   N+P  S+ P
Sbjct: 339 NYNNNYNNNYKKLYYNINYIEQIPVPVPVPIYCGNFPPRSMEP 381


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 607 NFHNGIFINWLGLVYDIXFVTTRSLDILQTIMFFNWPVVSLRP 479
           N++N  + N+  L Y+I ++    + I   I   N+P   + P
Sbjct: 95  NYNNNNYNNYKKLYYNINYIEQVPVPIPVPIYCGNFPPRPMGP 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,175
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)