Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P15
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    31   0.010
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    31   0.010
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.48 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 153 AAGIFLWILCRAHVPLPPTFAQ 88
           A GI  W LC  HV LP TF Q
Sbjct: 778 AFGILFWYLCAGHVRLPYTFEQ 799


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -1

Query: 153 AAGIFLWILCRAHVPLPPTFAQ 88
           A GI  W LC  HV LP TF Q
Sbjct: 816 AFGILFWYLCAGHVRLPYTFEQ 837


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 539 RQTTMATENLLINYSSN 489
           R  TM  ENLL+NY +N
Sbjct: 35  RNITMVLENLLMNYENN 51


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 562 VPFPCKSGDKPPWQQKIFSSII 497
           +P PC    KP W  K  SS+I
Sbjct: 35  MPQPCILKPKPLWTGKQISSLI 56


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 97  CRRQRYVGSAQNP 135
           CRRQRY  +A NP
Sbjct: 101 CRRQRYNIAAANP 113


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 547 KSGDKPPWQQKIFSSIIAAI 488
           ++GDKPP     F +++A++
Sbjct: 159 RNGDKPPLTYHQFQTVVASM 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,704
Number of Sequences: 438
Number of extensions: 4765
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)