Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P05
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   9.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   9.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 277 YRDPARLPSLPTQIQXVRKNG 339
           Y+D  +LP    Q + +R NG
Sbjct: 368 YKDGRQLPGTGRQSELLRLNG 388


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 277 YRDPARLPSLPTQIQXVRKNG 339
           Y+D  +LP    Q + +R NG
Sbjct: 368 YKDGRQLPGTGRQSELLRLNG 388


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 121 QRFSAPLHTNTFLAVQKDCRLFLE*AFRLIRH 26
           +RF+  ++ N+    +   R+FL  AF  I+H
Sbjct: 499 ERFTYKININSDKETKGMMRIFLGPAFDEIKH 530


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 121 QRFSAPLHTNTFLAVQKDCRLFLE*AFRLIRH 26
           +RF+  ++ N+    +   R+FL  AF  I+H
Sbjct: 499 ERFTYKININSDKETKGMMRIFLGPAFDEIKH 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,001
Number of Sequences: 438
Number of extensions: 1578
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)