Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_P01
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.64 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   7.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 24  TSLR*LYKFIKFTMSSRKTAGRRINKKRAQRATSNV---FAMFDQAQIAEFKEAFNMIDQ 194
           T+ R  Y F+ F+   R   GR+    + +   S +   F +    + +EF+   ++I +
Sbjct: 470 TANRHYYAFVPFSAGPRSCVGRKYAMLKLKIVLSTILRNFRVRSDVKESEFRLQADIILK 529

Query: 195 NRDGF 209
             DGF
Sbjct: 530 RADGF 534


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 312 FTMFLTLFGERLQGTDPEDVIKNA 383
           FT+ +T+ GE  +GT P   +  A
Sbjct: 182 FTISVTIDGETFEGTGPSKKLAKA 205


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 165 FKEAFNMIDQNRDGF 209
           F++A  M+D+N +GF
Sbjct: 220 FQKALRMVDENINGF 234


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 491 AQGSTNPRWTLR 526
           A+G  NPRW  R
Sbjct: 311 ARGKKNPRWEFR 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,638
Number of Sequences: 438
Number of extensions: 3272
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)