Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M17
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    23   1.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   2.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   2.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   5.8  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   7.7  

>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS
          protein.
          Length = 80

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 23 ISNMPEMIKSPADLKTAPF 79
          +S MP+ +K P D   AP+
Sbjct: 9  VSTMPKSLKEPCDGCAAPY 27


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 195 RVYRSLCPNEWVDKWDNQRAEGTFAGRI 278
           R++     NE VDK  N+RA G    +I
Sbjct: 376 RIFSPHEENESVDKHPNRRARGQLRTKI 403


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 79  RPTVP*PKSDEALLPKLRGLPPXARKFAAKNTSHATISRECTGL 210
           + TVP  K +   + K    P  ARK   KNT+    SR  + L
Sbjct: 322 KKTVPLKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSSL 365


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 163 AKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPVG 276
           A  TS AT S E +  +A ++ +         +PSP G
Sbjct: 29  ACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTG 66


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 240 PTCRPTHWGRETCTLS*NSSMARIFRRELSG 148
           PT      G+E  + S NS    IF+R L G
Sbjct: 31  PTGHQEMQGKEKNSASLNSENFGIFKRALMG 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,896
Number of Sequences: 438
Number of extensions: 2238
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)