Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M15
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.84 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.84 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 112 LELKVLKM-FQLFLIKYQKIKYNVPI 38
           ++L  +++ FQ+FL   QK K+NVP+
Sbjct: 181 IDLNAVRLCFQVFLEGSQKRKFNVPL 206


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 112 LELKVLKM-FQLFLIKYQKIKYNVPI 38
           ++L  +++ FQ+FL   QK K+NVP+
Sbjct: 181 IDLNAVRLCFQVFLEGSQKRKFNVPL 206


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 589 SLPGFSWSYYNIINRSKLK 645
           SLP + + Y N+IN  +++
Sbjct: 317 SLPYYKYKYLNVINALEMR 335


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 589 SLPGFSWSYYNIINRSKLK 645
           SLP + + Y N+IN  +++
Sbjct: 317 SLPYYKYKYLNVINALEMR 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,898
Number of Sequences: 438
Number of extensions: 2826
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)